LOCUS Exported 10824 bp ds-DNA circular SYN 04-DEC-2017
DEFINITION synthetic circular DNA
FEATURES Location/Qualifiers
source 1..10824
/organism="synthetic DNA construct"
/mol_type="other DNA"
LTR 61..294
/label=3' LTR (Delta-U3)
/note="self-inactivating 3' long terminal repeat (LTR) from
HIV-1"
promoter 1126..1230
/gene="bla"
/label=AmpR promoter
CDS 1231..2091
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
rep_origin 2262..2850
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
promoter 3096..3425
/label=SV40 promoter
/note="SV40 enhancer and early promoter"
rep_origin 3276..3411
/label=SV40 ori
/note="SV40 origin of replication"
intron 4559..4624
/label=small t intron
/note="SV40 (simian virus 40) small t antigen intron"
CDS 4754..4774
/codon_start=1
/product="nuclear localization signal of SV40 (simian virus
40) large T antigen"
/label=SV40 NLS
/translation="PKKKRKV"
polyA_signal 5199..5333
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
LTR 5502..6135
/label=3' LTR
/note="3' long terminal repeat (LTR) from HIV-1"
misc_feature 6182..6307
/label=HIV-1 Psi
/note="packaging signal of human immunodeficiency virus
type 1"
misc_feature 6799..7032
/label=RRE
/note="The Rev response element (RRE) of HIV-1 allows for
Rev-dependent mRNA export from the nucleus to the
cytoplasm."
misc_feature 7544..7661
/label=cPPT/CTS
/note="central polypurine tract and central termination
sequence of HIV-1"
misc_feature 8001..8459
/label=IL-2
CDS 8001..8060
/codon_start=1
/product="human interleukin-2 signal sequence"
/label=IL-2 signal sequence
/translation="MYRMQLLSCIALSLALVTNS"
misc_feature 8460..8471
/label=Furin Cleavage
CDS 8472..8525
/codon_start=1
/product="2A peptide from Thosea asigna virus capsid
protein"
/label=T2A
/note="Eukaryotic ribosomes fail to insert a peptide bond
between the Gly and Pro residues, yielding separate
polypeptides."
/translation="EGRGSLLTCGDVEENPGP"
CDS 8526..8804
/codon_start=1
/label=human CCL3 (MIP-1a)
/translation="MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQN
FIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA"
promoter 8927..9426
/label=PGK promoter
/note="mouse phosphoglycerate kinase 1 promoter"
CDS 9447..10157
/codon_start=1
/product="monomeric derivative of DsRed fluorescent protein
(Shaner et al., 2004)"
/label=mCherry
/note="mammalian codon-optimized"
/translation="MVSKGEEDNMAIIKEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEG
TQTAKLKVTKGGPLPFAWDILSPQFMYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNF
EDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALK
GEIKQRLKLKDGGHYDAEVKTTYKAKKPVQLPGAYNVNIKLDITSHNEDYTIVEQYERA
EGRHSTGGMDELYK"
misc_feature 10234..10822
/label=WPRE
/note="woodchuck hepatitis virus posttranscriptional
regulatory element"
ORIGIN
1 cgataccgtc gaccaaggca gctgtagatc ttagccactt tttaaaagaa aaggggggac
61 tggaagggct aattcactcc caacgaagac aagatctgct ttttgcttgt actgggtctc
121 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta
181 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact
241 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagcatct
301 agaattaatt ccgtgtattc tatagtgtca cctaaatcgt atgtgtatga tacataaggt
361 tatgtattaa ttgtagccgc gttctaacga caatatgtac aagcctaatt gtgtagcatc
421 tggcttactg aagcagaccc tatcatctct ctcgtaaact gccgtcagag tcggtttggt
481 tggacgaacc ttctgagttt ctggtaacgc cgtcccgcac ccggaaatgg tcagcgaacc
541 aatcagcagg gtcatcgcta gccagatcct ctacgccgga cgcatcgtgg ccggcatcac
601 cggcgccaca ggtgcggttg ctggcgccta tatcgccgac atcaccgatg gggaagatcg
661 ggctcgccac ttcgggctca tgagcgcttg tttcggcgtg ggtatggtgg caggccccgt
721 ggccggggga ctgttgggcg ccatctcctt gcatgcacca ttccttgcgg cggcggtgct
781 caacggcctc aacctactac tgggctgctt cctaatgcag gagtcgcata agggagagcg
841 tcgaatggtg cactctcagt acaatctagc tctgatgccg catagttaag ccagccccga
901 cacccgccaa cacccgctga cgcgccctga cgggcttgtc tgctcccggc atccgcttac
961 agacaagctg tgaccgtctc cgggagctgc atgtgtcaga ggttttcacc gtcatcaccg
1021 aaacgcgcga gacgaaaggg cctcgtgata cgcctatttt tataggttaa tgtcatgata
1081 ataatggttt cttagacgtc aggtggcact tttcggggaa atgtgcgcgg aacccctatt
1141 tgtttatttt tctaaataca ttcaaatatg tatccgctca tgagacaata accctgataa
1201 atgcttcaat aatattgaaa aaggaagagt atgagtattc aacatttccg tgtcgccctt
1261 attccctttt ttgcggcatt ttgccttcct gtttttgctc acccagaaac gctggtgaaa
1321 gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt acatcgaact ggatctcaac
1381 agcggtaaga tccttgagag ttttcgcccc gaagaacgtt ttccaatgat gagcactttt
1441 aaagttctgc tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga gcaactcggt
1501 cgccgcatac actattctca gaatgacttg gttgagtact caccagtcac agaaaagcat
1561 cttacggatg gcatgacagt aagagaatta tgcagtgctg ccataaccat gagtgataac
1621 actgcggcca acttacttct gacaacgatc ggaggaccga aggagctaac cgcttttttg
1681 cacaacatgg gggatcatgt aactcgcctt gatcgttggg aaccggagct gaatgaagcc
1741 ataccaaacg acgagcgtga caccacgatg cctgtagcaa tggcaacaac gttgcgcaaa
1801 ctattaactg gcgaactact tactctagct tcccggcaac aattaataga ctggatggag
1861 gcggataaag ttgcaggacc acttctgcgc tcggcccttc cggctggctg gtttattgct
1921 gataaatctg gagccggtga gcgtgggtct cgcggtatca ttgcagcact ggggccagat
1981 ggtaagccct cccgtatcgt agttatctac acgacgggga gtcaggcaac tatggatgaa
2041 cgaaatagac agatcgctga gataggtgcc tcactgatta agcattggta actgtcagac
2101 caagtttact catatatact ttagattgat ttaaaacttc atttttaatt taaaaggatc
2161 taggtgaaga tcctttttga taatctcatg accaaaatcc cttaacgtga gttttcgttc
2221 cactgagcgt cagaccccgt agaaaagatc aaaggatctt cttgagatcc tttttttctg
2281 cgcgtaatct gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt ttgtttgccg
2341 gatcaagagc taccaactct ttttccgaag gtaactggct tcagcagagc gcagatacca
2401 aatactgtcc ttctagtgta gccgtagtta ggccaccact tcaagaactc tgtagcaccg
2461 cctacatacc tcgctctgct aatcctgtta ccagtggctg ctgccagtgg cgataagtcg
2521 tgtcttaccg ggttggactc aagacgatag ttaccggata aggcgcagcg gtcgggctga
2581 acggggggtt cgtgcacaca gcccagcttg gagcgaacga cctacaccga actgagatac
2641 ctacagcgtg agctatgaga aagcgccacg cttcccgaag ggagaaaggc ggacaggtat
2701 ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg agcttccagg gggaaacgcc
2761 tggtatcttt atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg atttttgtga
2821 tgctcgtcag gggggcggag cctatggaaa aacgccagca acgcggcctt tttacggttc
2881 ctggcctttt gctggccttt tgctcacatg ttctttcctg cgttatcccc tgattctgtg
2941 gataaccgta ttaccgcctt tgagtgagct gataccgctc gccgcagccg aacgaccgag
3001 cgcagcgagt cagtgagcga ggaagcggaa gagcgcccaa tacgcaaacc gcctctcccc
3061 gcgcgttggc cgattcatta atgcagctgt ggaatgtgtg tcagttaggg tgtggaaagt
3121 ccccaggctc cccagcaggc agaagtatgc aaagcatgca tctcaattag tcagcaacca
3181 ggtgtggaaa gtccccaggc tccccagcag gcagaagtat gcaaagcatg catctcaatt
3241 agtcagcaac catagtcccg cccctaactc cgcccatccc gcccctaact ccgcccagtt
3301 ccgcccattc tccgccccat ggctgactaa ttttttttat ttatgcagag gccgaggccg
3361 cctcggcctc tgagctattc cagaagtagt gaggaggctt ttttggaggc ctaggctttt
3421 gcaaaaagct tggacacaag acaggcttgc gagatatgtt tgagaatacc actttatccc
3481 gcgtcaggga gaggcagtgc gtaaaaagac gcggactcat gtgaaatact ggtttttagt
3541 gcgccagatc tctataatct cgcgcaacct attttcccct cgaacacttt ttaagccgta
3601 gataaacagg ctgggacact tcacatgagc gaaaaataca tcgtcacctg ggacatgttg
3661 cagatccatg cacgtaaact cgcaagccga ctgatgcctt ctgaacaatg gaaaggcatt
3721 attgccgtaa gccgtggcgg tctgtaccgg gtgcgttact ggcgcgtgaa ctgggtattc
3781 gtcatgtcga taccgtttgt atttccagct acgatcacga caaccagcgc gagcttaaag
3841 tgctgaaacg cgcagaaggc gatggcgaag gcttcatcgt tattgatgac ctggtggata
3901 ccggtggtac tgcggttgcg attcgtgaaa tgtatccaaa agcgcacttt gtcaccatct
3961 tcgcaaaacc ggctggtcgt ccgctggttg atgactatgt tgttgatatc ccgcaagata
4021 cctggattga acagccgtgg gatatgggcg tcgtattcgt cccgccaatc tccggtcgct
4081 aatcttttca acgcctggca ctgccgggcg ttgttctttt taacttcagg cgggttacaa
4141 tagtttccag taagtattct ggaggctgca tccatgacac aggcaaacct gagcgaaacc
4201 ctgttcaaac cccgctttaa acatcctgaa acctcgacgc tagtccgccg ctttaatcac
4261 ggcgcacaac cgcctgtgca gtcggccctt gatggtaaaa ccatccctca ctggtatcgc
4321 atgattaacc gtctgatgtg gatctggcgc ggcattgacc cacgcgaaat cctcgacgtc
4381 caggcacgta ttgtgatgag cgatgccgaa cgtaccgacg atgatttata cgatacggtg
4441 attggctacc gtggcggcaa ctggatttat gagtgggccc cggatctttg tgaaggaacc
4501 ttacttctgt ggtgtgacat aattggacaa actacctaca gagatttaaa gctctaaggt
4561 aaatataaaa tttttaagtg tataatgtgt taaactactg attctaattg tttgtgtatt
4621 ttagattcca acctatggaa ctgatgaatg ggagcagtgg tggaatgcct ttaatgagga
4681 aaacctgttt tgctcagaag aaatgccatc tagtgatgat gaggctactg ctgactctca
4741 acattctact cctccaaaaa agaagagaaa ggtagaagac cccaaggact ttccttcaga
4801 attgctaagt tttttgagtc atgctgtgtt tagtaataga actcttgctt gctttgctat
4861 ttacaccaca aaggaaaaag ctgcactgct atacaagaaa attatggaaa aatattctgt
4921 aacctttata agtaggcata acagttataa tcataacata ctgttttttc ttactccaca
4981 caggcataga gtgtctgcta ttaataacta tgctcaaaaa ttgtgtacct ttagcttttt
5041 aatttgtaaa ggggttaata aggaatattt gatgtatagt gccttgacta gagatcataa
5101 tcagccatac cacatttgta gaggttttac ttgctttaaa aaacctccca cacctccccc
5161 tgaacctgaa acataaaatg aatgcaattg ttgttgttaa cttgtttatt gcagcttata
5221 atggttacaa ataaagcaat agcatcacaa atttcacaaa taaagcattt ttttcactgc
5281 attctagttg tggtttgtcc aaactcatca atgtatctta tcatgtctgg atcaactgga
5341 taactcaagc taaccaaaat catcccaaac ttcccacccc ataccctatt accactgcca
5401 attacctagt ggtttcattt actctaaacc tgtgattcct ctgaattatt ttcattttaa
5461 agaaattgta tttgttaaat atgtactaca aacttagtag ttggaagggc taattcactc
5521 ccaaagaaga caagatatcc ttgatctgtg gatctaccac acacaaggct acttccctga
5581 ttagcagaac tacacaccag ggccaggggt cagatatcca ctgacctttg gatggtgcta
5641 caagctagta ccagttgagc cagataaggt agaagaggcc aataaaggag agaacaccag
5701 cttgttacac cctgtgagcc tgcatgggat ggatgacccg gagagagaag tgttagagtg
5761 gaggtttgac agccgcctag catttcatca cgtggcccga gagctgcatc cggagtactt
5821 caagaactgc tgatatcgag cttgctacaa gggactttcc gctggggact ttccagggag
5881 gcgtggcctg ggcgggactg gggagtggcg agccctcaga tcctgcatat aagcagctgc
5941 tttttgcctg tactgggtct ctctggttag accagatctg agcctgggag ctctctggct
6001 aactagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt
6061 gtgcccgtct gttgtgtgac tctggtaact agagatccct cagacccttt tagtcagtgt
6121 ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaaggga aaccagagga
6181 gctctctcga cgcaggactc ggcttgctga agcgcgcacg gcaagaggcg aggggcggcg
6241 actggtgagt acgccaaaaa ttttgactag cggaggctag aaggagagag atgggtgcga
6301 gagcgtcagt attaagcggg ggagaattag atcgcgatgg gaaaaaattc ggttaaggcc
6361 agggggaaag aaaaaatata aattaaaaca tatagtatgg gcaagcaggg agctagaacg
6421 attcgcagtt aatcctggcc tgttagaaac atcagaaggc tgtagacaaa tactgggaca
6481 gctacaacca tcccttcaga caggatcaga agaacttaga tcattatata atacagtagc
6541 aaccctctat tgtgtgcatc aaaggataga gataaaagac accaaggaag ctttagacaa
6601 gatagaggaa gagcaaaaca aaagtaagac caccgcacag caagcggccg gtgatcttca
6661 gacctggacg atatatatga gggacaattg gagaagtgaa ttatataaat ataaagtagt
6721 aaaaattgaa ccattaggag tagcacccac caaggcaaag agaagagtgg tgcagagaga
6781 aaaaagagca gtgggaatag gagctttgtt ccttgggttc ttgggagcag caggaagcac
6841 tatgggcgca gcgtcaatga cgctgacggt acaggccaga caattattgt ctggtatagt
6901 gcagcagcag aacaatttgc tgagggctat tgaggcgcaa cagcatctgt tgcaactcac
6961 agtctggggc atcaagcagc tccaggcaag aatcctggct gtggaaagat acctaaagga
7021 tcaacagctc ctggggattt ggggttgctc tggaaaactc atttgcacca ctgctgtgcc
7081 ttggaatgct agttggagta ataaatctct ggaacagatt tggaatcaca cgacctggat
7141 ggagtgggac agagaaatta acaattacac aagcttaata cactccttaa ttgaagaatc
7201 gcaaaaccag caagaaaaga atgaacaaga attattggaa ttagataaat gggcaagttt
7261 gtggaattgg tttaacataa caaattggct gtggtatata aaattattca taatgatagt
7321 aggaggcttg gtaggtttaa gaatagtttt tgctgtactt tctatagtga atagagttag
7381 gcagggatat tcaccattat cgtttcagac ccacctccca accccgaggg gacccgacag
7441 gcccgaagga atagaagaag aaggtggaga gagagacaga gacagatcca ttcgattagt
7501 gaacggatct cgacggtcgc caaatggcag tattcatcca caattttaaa agaaaagggg
7561 ggattggggg gtacagtgca ggggaaagaa tagtagacat aatagcaaca gacatacaaa
7621 ctaaagaatt acaaaaacaa attacaaaaa ttcaaaattt tcgggtttat tacagggaca
7681 gcagagatcc agtttggatc gataagcttg atatcgaatt cggagcactg tcctccgaac
7741 gtcggagcac tgtcctccga acgtcggagc actgtcctcc gaacgtcgga gcactgtcct
7801 ccgaacggag catgtcctcc gaacgtcgga gcactgtcct ccgaacgact agttaggcgt
7861 gtacggtggg aggcctatat aagcagagct cgtttagtga accgtcagat cgcctggaga
7921 cgccatccac gctgttttga cctccataga agacaccggg accgatccag cctctcgaca
7981 ttcgttggat cgccgccacc atgtacagga tgcagctgct cagttgcatc gccttgtctc
8041 tcgctctcgt gaccaatagt gccccaacat ccagctcaac caagaagact cagcttcagt
8101 tggaacatct gttgctggat ctgcagatga tccttaatgg gattaacaac tacaagaacc
8161 ccaaactgac taggatgctg accttcaaat tctatatgcc aaaaaaggca acggaactga
8221 agcacctcca gtgtttggag gaagagctga agcccttgga ggaagtcctt aatttggccc
8281 agagcaaaaa ctttcacctg cgccctaggg acctgattag taacattaat gtcattgttc
8341 tcgaactcaa aggaagtgaa accactttta tgtgcgagta cgcggatgaa actgccacta
8401 tcgtggagtt cttgaataga tggattacct tttgccagtc tataatctcc acactcacac
8461 ggaagcgcag agagggtcga ggttccctgc tgacttgtgg cgacgtagaa gagaatcctg
8521 ggcctatgca ggtctcaacg gcagctctgg ccgtcctcct gtgcaccatg gccctgtgta
8581 accaatttag cgctagcctc gctgccgaca cccctaccgc ctgttgtttt tcttacacca
8641 gccggcagat cccacagaac tttatagctg actactttga aacaagtagt cagtgttcta
8701 aacctggagt tatcttcttg acaaagcgca gcaggcaggt gtgcgccgac cctagtgagg
8761 agtgggtcca gaagtatgtg tctgatctgg aactctccgc ctgagatcct tgacttgcgg
8821 ccgcaactcc cacctgcaac atgcgtgact gactgaggcc gcgactctag agtcgacctg
8881 catctaggcg ccggaattag atctctcgag gttaacgaat tctaccgggt aggggaggcg
8941 cttttcccaa ggcagtctgg agcatgcgct ttagcagccc cgctgggcac ttggcgctac
9001 acaagtggcc tctggcctcg cacacattcc acatccaccg gtaggcgcca accggctccg
9061 ttctttggtg gccccttcgc gccaccttct actcctcccc tagtcaggaa gttccccccc
9121 gccccgcagc tcgcgtcgtg caggacgtga caaatggaag tagcacgtct cactagtctc
9181 gtgcagatgg acagcaccgc tgagcaatgg aagcgggtag gcctttgggg cagcggccaa
9241 tagcagcttt gctccttcgc tttctgggct cagaggctgg gaaggggtgg gtccgggggc
9301 gggctcaggg gcgggctcag gggcggggcg ggcgcccgaa ggtcctccgg aggcccggca
9361 ttctgcacgc ttcaaaagcg cacgtctgcc gcgctgttct cctcttcctc atctccgggc
9421 ctttcgacct gcagcccaag cttaccatgg tgagcaaggg cgaggaggat aacatggcca
9481 tcatcaagga gttcatgcgc ttcaaggtgc acatggaggg ctccgtgaac ggccacgagt
9541 tcgagatcga gggcgagggc gagggccgcc cctacgaggg cacccagacc gccaagctga
9601 aggtgaccaa gggtggcccc ctgcccttcg cctgggacat cctgtcccct cagttcatgt
9661 acggctccaa ggcctacgtg aagcaccccg ccgacatccc cgactacttg aagctgtcct
9721 tccccgaggg cttcaagtgg gagcgcgtga tgaacttcga ggacggcggc gtggtgaccg
9781 tgacccagga ctcctccctg caggacggcg agttcatcta caaggtgaag ctgcgcggca
9841 ccaacttccc ctccgacggc cccgtaatgc agaagaagac catgggctgg gaggcctcct
9901 ccgagcggat gtaccccgag gacggcgccc tgaagggcga gatcaagcag aggctgaagc
9961 tgaaggacgg cggccactac gacgctgagg tcaagaccac ctacaaggcc aagaagcccg
10021 tgcagctgcc cggcgcctac aacgtcaaca tcaagttgga catcacctcc cacaacgagg
10081 actacaccat cgtggaacag tacgaacgcg ccgagggccg ccactccacc ggcggcatgg
10141 acgagctgta caagtaaagc ggccgcgact ctagagtcga cctgcaggca tgcaagcttg
10201 caggcatgca agcttgatat caagcttatc gataatcaac ctctggatta caaaatttgt
10261 gaaagattga ctggtattct taactatgtt gctcctttta cgctatgtgg atacgctgct
10321 ttaatgcctt tgtatcatgc tattgcttcc cgtatggctt tcattttctc ctccttgtat
10381 aaatcctggt tgctgtctct ttatgaggag ttgtggcccg ttgtcaggca acgtggcgtg
10441 gtgtgcactg tgtttgctga cgcaaccccc actggttggg gcattgccac cacctgtcag
10501 ctcctttccg ggactttcgc tttccccctc cctattgcca cggcggaact catcgccgcc
10561 tgccttgccc gctgctggac aggggctcgg ctgttgggca ctgacaattc cgtggtgttg
10621 tcggggaaat catcgtcctt tccttggctg ctcgcctgtg ttgccacctg gattctgcgc
10681 gggacgtcct tctgctacgt cccttcggcc ctcaatccag cggaccttcc ttcccgcggc
10741 ctgctgccgg ctctgcggcc tcttccgcgt cttcgccttc gccctcagac gagtcggatc
10801 tccctttggg ccgcctcccc gcat
//